PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008781-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 78aa    MW: 8936 Da    PI: 9.3691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008781-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-091257245
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        ++WT+ E + + +a + + ++   +W  +a+ +g g+t++++k r+ 
  WALNUT_00008781-RA 12 DSWTAKENKAFERALAVYDKDtpdRWYNVAKAVG-GKTEEEVKRRYE 57
                        58********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.516964IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.1E-6962IPR009057Homeodomain-like
SMARTSM007173.2E-91062IPR001005SANT/Myb domain
SuperFamilySSF466896.21E-141267IPR009057Homeodomain-like
PfamPF002499.2E-81358IPR001005SANT/Myb domain
CDDcd001671.18E-61460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASRSMSSKS SDSWTAKENK AFERALAVYD KDTPDRWYNV AKAVGGKTEE EVKRRYEELV  60
EDVKRIEAGG VPYPKYKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-311078775RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555296.13e-36PREDICTED: protein RADIALIS-like 2
SwissprotQ1A1732e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLW9QGR55e-36W9QGR5_9R
STRINGPOPTR_0009s11930.12e-33(Populus trichocarpa)
STRINGPOPTR_0004s16270.14e-33(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-32RAD-like 6